J3_5H4P_030
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 5H4P|1|4|U|60, 5H4P|1|4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5H4P_030 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0943
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
5H4P|1|4|A|44
5H4P|1|4|C|45
*
5H4P|1|4|G|58
5H4P|1|4|A|59
5H4P|1|4|U|60
5H4P|1|4|A|61
5H4P|1|4|C|62
5H4P|1|4|G|63
5H4P|1|4|U|64
*
5H4P|1|4|A|96
5H4P|1|4|A|97
5H4P|1|4|U|98
5H4P|1|4|C|99
5H4P|1|4|U|100
Current chains
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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