J3_5H5U_007

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5H5U|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5H5U_007 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1222

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

5H5U|1|A|C|1306
5H5U|1|A|A|1307
5H5U|1|A|A|1308
5H5U|1|A|G|1309
*
5H5U|1|A|C|1605
5H5U|1|A|C|1606
5H5U|1|A|C|1607
5H5U|1|A|A|1608
5H5U|1|A|A|1609
5H5U|1|A|A|1610
5H5U|1|A|C|1611
*
5H5U|1|A|G|1620
5H5U|1|A|U|1621
5H5U|1|A|G|1622

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34