3D structure

PDB id
5H5U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanistic insights into the alternative translation termination by ArfA and RF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
5H5U|1|A|U|2833, 5H5U|1|A|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5H5U_013 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1427
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

5H5U|1|A|G|2812
5H5U|1|A|A|2813
5H5U|1|A|A|2814
5H5U|1|A|C|2815
*
5H5U|1|A|G|2831
5H5U|1|A|U|2832
5H5U|1|A|U|2833
5H5U|1|A|G|2834
5H5U|1|A|A|2835
5H5U|1|A|U|2836
*
5H5U|1|A|A|2882
5H5U|1|A|A|2883
5H5U|1|A|U|2884
5H5U|1|A|G|2885
5H5U|1|A|A|2886
5H5U|1|A|A|2887
5H5U|1|A|C|2888

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain O
50S ribosomal protein L17
Chain T
50S ribosomal protein L22
Chain b
50S ribosomal protein L32

Coloring options:


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