J3_5H5U_019

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5H5U_019 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0791

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5H5U|1|h|C|936
5H5U|1|h|A|937
5H5U|1|h|A|938
5H5U|1|h|G|939
*
5H5U|1|h|C|1344
5H5U|1|h|U|1345
5H5U|1|h|A|1346
5H5U|1|h|G|1347
5H5U|1|h|U|1348
5H5U|1|h|A|1349
5H5U|1|h|A|1350
*
5H5U|1|h|U|1372
5H5U|1|h|G|1373
5H5U|1|h|A|1374
5H5U|1|h|A|1375
5H5U|1|h|U|1376
5H5U|1|h|A|1377
5H5U|1|h|C|1378
5H5U|1|h|G|1379

Current chains

Chain h

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S7

Chain p

30S ribosomal protein S9