J3_5H5U_021
3D structure
- PDB id
- 5H5U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanistic insights into the alternative translation termination by ArfA and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 5H5U|1|h|A|975, 5H5U|1|h|G|976, 5H5U|1|h|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5H5U_021 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0648
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5H5U|1|h|U|955
5H5U|1|h|U|956
5H5U|1|h|U|957
5H5U|1|h|A|958
5H5U|1|h|A|959
5H5U|1|h|U|960
5H5U|1|h|U|961
5H5U|1|h|C|962
*
5H5U|1|h|G|973
5H5U|1|h|A|974
5H5U|1|h|A|975
5H5U|1|h|G|976
5H5U|1|h|A|977
5H5U|1|h|A|978
5H5U|1|h|C|979
5H5U|1|h|C|980
5H5U|1|h|U|981
5H5U|1|h|U|982
5H5U|1|h|A|983
5H5U|1|h|C|984
*
5H5U|1|h|G|1221
5H5U|1|h|G|1222
5H5U|1|h|C|1223
5H5U|1|h|U|1224
5H5U|1|h|A|1225
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain 4
- Peptide chain release factor 2
- Chain q
- 30S ribosomal protein S10
- Chain t
- 30S ribosomal protein S13
- Chain u
- 30S ribosomal protein S14
- Chain z
- 30S ribosomal protein S19
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