J3_5HAU_009

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

5HAU|1|1A|A|2802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HAU_009 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.1056

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

5HAU|1|1A|C|2801
5HAU|1|1A|A|2802
5HAU|1|1A|C|2803
*
5HAU|1|1A|G|2815
5HAU|1|1A|G|2816
5HAU|1|1A|U|2817
5HAU|1|1A|A|2818
5HAU|1|1A|A|2819
5HAU|1|1A|G|2820
*
5HAU|1|1A|C|2898
5HAU|1|1A|G|2899
5HAU|1|1A|A|2900
5HAU|1|1A|G|2901
5HAU|1|1A|G|2902

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1U

50S ribosomal protein L22