3D structure

PDB id
5HAU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5HAU_013 not in the Motif Atlas
Homologous match to J3_4LFB_003
Geometric discrepancy: 0.0738
The information below is about J3_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.4
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

5HAU|1|1a|U|921
5HAU|1|1a|G|922
5HAU|1|1a|G|923
5HAU|1|1a|A|924
*
5HAU|1|1a|U|1217
5HAU|1|1a|A|1218
5HAU|1|1a|C|1219
*
5HAU|1|1a|G|1319
5HAU|1|1a|G|1320
5HAU|1|1a|A|1321
5HAU|1|1a|A|1322

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1i
30S ribosomal protein S9
Chain 1m
30S ribosomal protein S13
Chain 1u
30S ribosomal protein Thx
Chain 1w
Transfer RNA; tRNA

Coloring options:


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