J3_5HAU_020

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5HAU|1|2A|G|732, 5HAU|1|2A|G|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HAU_020 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0566

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5HAU|1|2A|C|729
5HAU|1|2A|G|730
5HAU|1|2A|A|731
5HAU|1|2A|G|732
5HAU|1|2A|C|733
5HAU|1|2A|U|734
5HAU|1|2A|A|735
*
5HAU|1|2A|U|819
5HAU|1|2A|A|820
5HAU|1|2A|G|821
*
5HAU|1|2A|C|837
5HAU|1|2A|G|838
5HAU|1|2A|A|839
5HAU|1|2A|G|840

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2x

Cathelicidin-3