J3_5HAU_030

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HAU_030 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0989

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5HAU|1|2a|U|921
5HAU|1|2a|G|922
5HAU|1|2a|G|923
5HAU|1|2a|A|924
*
5HAU|1|2a|U|1217
5HAU|1|2a|A|1218
5HAU|1|2a|C|1219
*
5HAU|1|2a|G|1319
5HAU|1|2a|G|1320
5HAU|1|2a|A|1321
5HAU|1|2a|A|1322

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2i

30S ribosomal protein S9

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx

Chain 2w

Transfer RNA; tRNA