3D structure

PDB id
5HAU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGUCAG*CGCAACC*GACGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5HAU_034 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.1055
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

5HAU|1|2a|C|1046
5HAU|1|2a|G|1047
5HAU|1|2a|U|1048
5HAU|1|2a|C|1049
5HAU|1|2a|A|1050
5HAU|1|2a|G|1051
*
5HAU|1|2a|C|1090
5HAU|1|2a|G|1091
5HAU|1|2a|C|1092
5HAU|1|2a|A|1093
5HAU|1|2a|A|1094
5HAU|1|2a|C|1095
5HAU|1|2a|C|1096
*
5HAU|1|2a|G|1169
5HAU|1|2a|A|1170
5HAU|1|2a|C|1171
5HAU|1|2a|G|1172
5HAU|1|2a|A|1173
5HAU|1|2a|C|1174
5HAU|1|2a|G|1175

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2c
30S ribosomal protein S3
Chain 2e
30S ribosomal protein S5
Chain 2i
30S ribosomal protein S9
Chain 2j
30S ribosomal protein S10
Chain 2n
30S ribosomal protein S14 type Z

Coloring options:


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