J3_5HAU_048
3D structure
- PDB id
- 5HAU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GC*GGAAUCU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HAU_048 not in the Motif Atlas
- Geometric match to J3_8C3A_082
- Geometric discrepancy: 0.1993
- The information below is about J3_8C3A_082
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.2
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
5HAU|1|1a|G|47
5HAU|1|1a|C|48
*
5HAU|1|1a|G|357
5HAU|1|1a|G|358
5HAU|1|1a|A|359
5HAU|1|1a|A|360
5HAU|1|1a|U|361
5HAU|1|1a|C|362
5HAU|1|1a|U|363
*
5HAU|1|1a|A|389
5HAU|1|1a|G|390
5HAU|1|1a|C|391
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1p
- 30S ribosomal protein S16
- Chain 1z
- Chimera protein of 50S ribosomal protein L9 and Elongation factor G
Coloring options: