J3_5HAU_056

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

5HAU|1|2A|U|528, 5HAU|1|2A|G|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HAU_056 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0544

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5HAU|1|2A|G|29
5HAU|1|2A|C|30
*
5HAU|1|2A|G|499
5HAU|1|2A|U|500
5HAU|1|2A|G|501
5HAU|1|2A|A|502
5HAU|1|2A|A|503
5HAU|1|2A|A|504
5HAU|1|2A|A|505
5HAU|1|2A|G|506
5HAU|1|2A|A|507
5HAU|1|2A|A|508
5HAU|1|2A|C|509
*
5HAU|1|2A|G|520
5HAU|1|2A|A|521
5HAU|1|2A|G|522
5HAU|1|2A|U|523
5HAU|1|2A|G|524
5HAU|1|2A|A|525
5HAU|1|2A|A|526
5HAU|1|2A|A|527
5HAU|1|2A|U|528
5HAU|1|2A|A|529
5HAU|1|2A|G|530
5HAU|1|2A|A|531
5HAU|1|2A|G|532
5HAU|1|2A|C|533
5HAU|1|2A|C|534

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2S

50S ribosomal protein L20

Chain 2U

50S ribosomal protein L22

Chain 2W

50S ribosomal protein L24