J3_5HAU_059

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

5HAU|1|2A|U|287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HAU_059 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1286

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5HAU|1|2A|U|257
5HAU|1|2A|A|258
5HAU|1|2A|A|259
5HAU|1|2A|A|260
5HAU|1|2A|C|261
*
5HAU|1|2A|G|281
5HAU|1|2A|G|282
5HAU|1|2A|G|283
5HAU|1|2A|U|284
5HAU|1|2A|C|285
5HAU|1|2A|G|286
5HAU|1|2A|U|287
5HAU|1|2A|G|288
*
5HAU|1|2A|C|395
5HAU|1|2A|G|396

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains