J3_5HAU_062

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HAU_062 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0727

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5HAU|1|2A|G|1469
5HAU|1|2A|G|1470
5HAU|1|2A|G|1471
5HAU|1|2A|A|1472
5HAU|1|2A|C|1473
5HAU|1|2A|G|1474
*
5HAU|1|2A|C|1610
5HAU|1|2A|C|1611
*
5HAU|1|2A|G|1614
5HAU|1|2A|A|1615
5HAU|1|2A|A|1616
5HAU|1|2A|A|1617
5HAU|1|2A|A|1618
5HAU|1|2A|G|1619
5HAU|1|2A|C|1620

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2