3D structure

PDB id
5HAU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGA*UUUAAAG*CAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5HAU_074 not in the Motif Atlas
Homologous match to J3_5J7L_040
Geometric discrepancy: 0.1476
The information below is about J3_5J7L_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28621.5
Basepair signature
cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
Number of instances in this motif group
7

Unit IDs

5HAU|1|1A|G|1100
5HAU|1|1A|G|1101
5HAU|1|1A|A|1102
*
5HAU|1|1A|U|1126
5HAU|1|1A|U|1127
5HAU|1|1A|U|1128
5HAU|1|1A|A|1129
5HAU|1|1A|A|1130
5HAU|1|1A|A|1131
5HAU|1|1A|G|1132
*
5HAU|1|1A|C|1147
5HAU|1|1A|A|1148
5HAU|1|1A|C|1149

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L36
Chain 1J
50S ribosomal protein L10
Chain 1K
50S ribosomal protein L11

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.4379 s
Application loaded.