J3_5HCP_007
3D structure
- PDB id
- 5HCP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 5HCP|1|1A|A|2529, 5HCP|1|1A|U|2530
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCP_007 not in the Motif Atlas
- Homologous match to J3_7RQB_012
- Geometric discrepancy: 0.0421
- The information below is about J3_7RQB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.3
- Basepair signature
- cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5HCP|1|1A|C|2528
5HCP|1|1A|A|2529
5HCP|1|1A|U|2530
5HCP|1|1A|C|2531
*
5HCP|1|1A|G|2556
5HCP|1|1A|U|2557
5HCP|1|1A|U|2558
*
5HCP|1|1A|A|2572
5HCP|1|1A|U|2573
5HCP|1|1A|U|2574
5HCP|1|1A|A|2575
5HCP|1|1A|A|2576
5HCP|1|1A|A|2577
5HCP|1|1A|G|2578
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1N
- 50S ribosomal protein L13
- Chain 1O
- 50S ribosomal protein L14
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