J3_5HCP_015
3D structure
- PDB id
- 5HCP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 5HCP|1|1a|A|1165
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCP_015 not in the Motif Atlas
- Homologous match to J3_6CZR_025
- Geometric discrepancy: 0.1493
- The information below is about J3_6CZR_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.1
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
5HCP|1|1a|C|1099
5HCP|1|1a|G|1100
5HCP|1|1a|C|1101
*
5HCP|1|1a|G|1138
5HCP|1|1a|G|1139
5HCP|1|1a|A|1140
5HCP|1|1a|C|1141
5HCP|1|1a|U|1142
5HCP|1|1a|G|1143
5HCP|1|1a|C|1144
*
5HCP|1|1a|G|1157
5HCP|1|1a|A|1158
5HCP|1|1a|G|1159
5HCP|1|1a|G|1160
5HCP|1|1a|A|1161
5HCP|1|1a|A|1162
5HCP|1|1a|G|1163
5HCP|1|1a|G|1164
5HCP|1|1a|A|1165
5HCP|1|1a|G|1166
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14 type Z
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