J3_5HCP_022

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HCP_022 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0532

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5HCP|1|2A|U|2112
5HCP|1|2A|U|2113
5HCP|1|2A|G|2114
*
5HCP|1|2A|C|2217
5HCP|1|2A|U|2218
5HCP|1|2A|A|2219
5HCP|1|2A|A|2220
5HCP|1|2A|C|2221
*
5HCP|1|2A|G|2234
5HCP|1|2A|G|2235
5HCP|1|2A|A|2236
5HCP|1|2A|C|2237
5HCP|1|2A|A|2238
5HCP|1|2A|G|2239

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2D

50S ribosomal protein L2

Chain 2I

50S ribosomal protein L9