J3_5HCP_030
3D structure
- PDB id
- 5HCP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCP_030 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1383
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5HCP|1|2a|C|1046
5HCP|1|2a|G|1047
5HCP|1|2a|U|1048
5HCP|1|2a|C|1049
5HCP|1|2a|A|1050
5HCP|1|2a|G|1051
*
5HCP|1|2a|C|1090
5HCP|1|2a|G|1091
5HCP|1|2a|C|1092
5HCP|1|2a|A|1093
5HCP|1|2a|A|1094
5HCP|1|2a|C|1095
5HCP|1|2a|C|1096
*
5HCP|1|2a|G|1169
5HCP|1|2a|A|1170
5HCP|1|2a|C|1171
5HCP|1|2a|G|1172
5HCP|1|2a|A|1173
5HCP|1|2a|C|1174
5HCP|1|2a|G|1175
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2c
- 30S ribosomal protein S3
- Chain 2e
- 30S ribosomal protein S5
- Chain 2i
- 30S ribosomal protein S9
- Chain 2j
- 30S ribosomal protein S10
- Chain 2n
- 30S ribosomal protein S14 type Z
Coloring options: