J3_5HCP_050

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HCP_050 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.0952

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

5HCP|1|1a|U|1056
5HCP|1|1a|G|1057
*
5HCP|1|1a|U|1066
5HCP|1|1a|G|1067
5HCP|1|1a|U|1068
5HCP|1|1a|U|1069
*
5HCP|1|1a|G|1082
5HCP|1|1a|C|1083
5HCP|1|1a|A|1084
5HCP|1|1a|A|1085

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2

Chain 1e

30S ribosomal protein S5