J3_5HCP_059

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HCP_059 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0635

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5HCP|1|2A|G|1469
5HCP|1|2A|G|1470
5HCP|1|2A|G|1471
5HCP|1|2A|A|1472
5HCP|1|2A|C|1473
5HCP|1|2A|G|1474
*
5HCP|1|2A|C|1610
5HCP|1|2A|C|1611
*
5HCP|1|2A|G|1614
5HCP|1|2A|A|1615
5HCP|1|2A|A|1616
5HCP|1|2A|A|1617
5HCP|1|2A|A|1618
5HCP|1|2A|G|1619
5HCP|1|2A|C|1620

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2