J3_5HCQ_008
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAC*GGUAAG*CGAGG
- Length
- 14 nucleotides
- Bulged bases
- 5HCQ|1|1A|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCQ_008 not in the Motif Atlas
- Homologous match to J3_7RQB_013
- Geometric discrepancy: 0.0833
- The information below is about J3_7RQB_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24416.1
- Basepair signature
- cWW-F-F-tWH-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5HCQ|1|1A|C|2801
5HCQ|1|1A|A|2802
5HCQ|1|1A|C|2803
*
5HCQ|1|1A|G|2815
5HCQ|1|1A|G|2816
5HCQ|1|1A|U|2817
5HCQ|1|1A|A|2818
5HCQ|1|1A|A|2819
5HCQ|1|1A|G|2820
*
5HCQ|1|1A|C|2898
5HCQ|1|1A|G|2899
5HCQ|1|1A|A|2900
5HCQ|1|1A|G|2901
5HCQ|1|1A|G|2902
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1W
- 50S ribosomal protein L22
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