3D structure

PDB id
5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5HCQ_013 not in the Motif Atlas
Homologous match to J3_4LFB_005
Geometric discrepancy: 0.161
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

5HCQ|1|1a|C|968
5HCQ|1|1a|U|969
5HCQ|1|1a|U|970
5HCQ|1|1a|G|971
*
5HCQ|1|1a|C|1028
5HCQ|1|1a|A|1029
5HCQ|1|1a|G|1030
*
5HCQ|1|1a|C|1192
5HCQ|1|1a|U|1193
5HCQ|1|1a|U|1194
5HCQ|1|1a|A|1195
5HCQ|1|1a|C|1196
5HCQ|1|1a|G|1197

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1n
30S ribosomal protein S14 type Z

Coloring options:


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