J3_5HCQ_013
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCQ_013 not in the Motif Atlas
- Homologous match to J3_4LFB_005
- Geometric discrepancy: 0.161
- The information below is about J3_4LFB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82572.1
- Basepair signature
- cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5HCQ|1|1a|C|968
5HCQ|1|1a|U|969
5HCQ|1|1a|U|970
5HCQ|1|1a|G|971
*
5HCQ|1|1a|C|1028
5HCQ|1|1a|A|1029
5HCQ|1|1a|G|1030
*
5HCQ|1|1a|C|1192
5HCQ|1|1a|U|1193
5HCQ|1|1a|U|1194
5HCQ|1|1a|A|1195
5HCQ|1|1a|C|1196
5HCQ|1|1a|G|1197
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1n
- 30S ribosomal protein S14 type Z
Coloring options: