J3_5HCQ_040
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCQ_040 not in the Motif Atlas
- Homologous match to J3_9DFE_013
- Geometric discrepancy: 0.0553
- The information below is about J3_9DFE_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5HCQ|1|1A|G|1469
5HCQ|1|1A|G|1470
5HCQ|1|1A|G|1471
5HCQ|1|1A|A|1472
5HCQ|1|1A|C|1473
5HCQ|1|1A|G|1474
*
5HCQ|1|1A|C|1610
5HCQ|1|1A|C|1611
*
5HCQ|1|1A|G|1614
5HCQ|1|1A|A|1615
5HCQ|1|1A|A|1616
5HCQ|1|1A|A|1617
5HCQ|1|1A|A|1618
5HCQ|1|1A|G|1619
5HCQ|1|1A|C|1620
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
Coloring options: