J3_5HCR_019

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAG*CUUUAAAGAGUG*CUCAC

Length

21 nucleotides

Bulged bases

5HCR|1|2A|A|1133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCR|1|2A|G|1100
5HCR|1|2A|G|1101
5HCR|1|2A|A|1102
5HCR|1|2A|G|1103
*
5HCR|1|2A|C|1125
5HCR|1|2A|U|1126
5HCR|1|2A|U|1127
5HCR|1|2A|U|1128
5HCR|1|2A|A|1129
5HCR|1|2A|A|1130
5HCR|1|2A|A|1131
5HCR|1|2A|G|1132
5HCR|1|2A|A|1133
5HCR|1|2A|G|1134
5HCR|1|2A|U|1135
5HCR|1|2A|G|1136
*
5HCR|1|2A|C|1145
5HCR|1|2A|U|1146
5HCR|1|2A|C|1147
5HCR|1|2A|A|1148
5HCR|1|2A|C|1149

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2Q

50S ribosomal protein L16