J3_5HCR_059
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 5HCR|1|2A|A|2399, 5HCR|1|2A|U|2401, 5HCR|1|2A|A|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HCR_059 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.0572
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5HCR|1|2A|G|2293
5HCR|1|2A|C|2294
5HCR|1|2A|C|2295
*
5HCR|1|2A|G|2395
5HCR|1|2A|C|2396
5HCR|1|2A|C|2397
5HCR|1|2A|U|2398
5HCR|1|2A|A|2399
5HCR|1|2A|G|2400
5HCR|1|2A|U|2401
5HCR|1|2A|G|2402
5HCR|1|2A|A|2403
5HCR|1|2A|A|2404
5HCR|1|2A|C|2405
5HCR|1|2A|C|2406
*
5HCR|1|2A|G|2432
5HCR|1|2A|A|2433
5HCR|1|2A|U|2434
5HCR|1|2A|C|2435
5HCR|1|2A|A|2436
5HCR|1|2A|A|2437
5HCR|1|2A|C|2438
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 21
- 50S ribosomal protein L28
- Chain 26
- 50S ribosomal protein L33
- Chain 28
- 50S ribosomal protein L35
- Chain 2P
- 50S ribosomal protein L15
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