J3_5HCR_063

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCCUAAG*UAGGAAUCUUC*GAGC

Length

22 nucleotides

Bulged bases

5HCR|1|2a|C|49, 5HCR|1|2a|A|51, 5HCR|1|2a|A|52, 5HCR|1|2a|U|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCR|1|2a|G|47
5HCR|1|2a|C|48
5HCR|1|2a|C|49
5HCR|1|2a|U|50
5HCR|1|2a|A|51
5HCR|1|2a|A|52
5HCR|1|2a|G|53
*
5HCR|1|2a|U|355
5HCR|1|2a|A|356
5HCR|1|2a|G|357
5HCR|1|2a|G|358
5HCR|1|2a|A|359
5HCR|1|2a|A|360
5HCR|1|2a|U|361
5HCR|1|2a|C|362
5HCR|1|2a|U|363
5HCR|1|2a|U|364
5HCR|1|2a|C|365
*
5HCR|1|2a|G|388
5HCR|1|2a|A|389
5HCR|1|2a|G|390
5HCR|1|2a|C|391

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16