J3_5HD1_013
3D structure
- PDB id
- 5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HD1_013 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.0873
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5HD1|1|1a|C|1046
5HD1|1|1a|G|1047
5HD1|1|1a|U|1048
5HD1|1|1a|C|1049
5HD1|1|1a|A|1050
5HD1|1|1a|G|1051
*
5HD1|1|1a|C|1090
5HD1|1|1a|G|1091
5HD1|1|1a|C|1092
5HD1|1|1a|A|1093
5HD1|1|1a|A|1094
5HD1|1|1a|C|1095
5HD1|1|1a|C|1096
*
5HD1|1|1a|G|1169
5HD1|1|1a|A|1170
5HD1|1|1a|C|1171
5HD1|1|1a|G|1172
5HD1|1|1a|A|1173
5HD1|1|1a|C|1174
5HD1|1|1a|G|1175
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1c
- 30S ribosomal protein S3
- Chain 1e
- 30S ribosomal protein S5
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14 type Z
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