J3_5HD1_066
3D structure
- PDB id
- 5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 5HD1|1|2a|U|707
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5HD1_066 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.1244
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5HD1|1|2a|U|656
5HD1|1|2a|G|657
*
5HD1|1|2a|C|701
5HD1|1|2a|G|702
5HD1|1|2a|C|703
5HD1|1|2a|C|704
5HD1|1|2a|G|705
5HD1|1|2a|A|706
5HD1|1|2a|U|707
5HD1|1|2a|G|708
5HD1|1|2a|G|709
*
5HD1|1|2a|C|716
5HD1|1|2a|A|717
5HD1|1|2a|G|718
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2D
- 50S ribosomal protein L2
- Chain 2f
- 30S ribosomal protein S6
- Chain 2k
- 30S ribosomal protein S11
- Chain 2o
- 30S ribosomal protein S15
- Chain 2r
- 30S ribosomal protein S18
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