J3_5HKV_004

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HKV_004 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.0861

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

5HKV|1|X|C|743
5HKV|1|X|A|744
5HKV|1|X|G|745
*
5HKV|1|X|C|777
5HKV|1|X|G|778
5HKV|1|X|A|779
5HKV|1|X|A|780
5HKV|1|X|C|781
*
5HKV|1|X|G|805
5HKV|1|X|A|806
5HKV|1|X|U|807
5HKV|1|X|G|808

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2