J3_5HKV_006

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

5HKV|1|X|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HKV_006 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.0645

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

5HKV|1|X|C|1342
5HKV|1|X|U|1343
5HKV|1|X|A|1344
5HKV|1|X|A|1345
5HKV|1|X|G|1346
*
5HKV|1|X|C|1649
5HKV|1|X|G|1650
5HKV|1|X|C|1651
5HKV|1|X|A|1652
5HKV|1|X|A|1653
5HKV|1|X|A|1654
5HKV|1|X|C|1655
*
5HKV|1|X|G|1664
5HKV|1|X|U|1665
5HKV|1|X|A|1666
5HKV|1|X|G|1667

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34