J3_5HL7_007

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

5HL7|1|X|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HL7_007 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.0648

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

5HL7|1|X|C|1342
5HL7|1|X|U|1343
5HL7|1|X|A|1344
5HL7|1|X|A|1345
5HL7|1|X|G|1346
*
5HL7|1|X|C|1649
5HL7|1|X|G|1650
5HL7|1|X|C|1651
5HL7|1|X|A|1652
5HL7|1|X|A|1653
5HL7|1|X|A|1654
5HL7|1|X|C|1655
*
5HL7|1|X|G|1664
5HL7|1|X|U|1665
5HL7|1|X|A|1666
5HL7|1|X|G|1667

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34