J3_5HL7_008

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5HL7_008 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1599

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5HL7|1|X|U|1381
5HL7|1|X|C|1382
5HL7|1|X|G|1383
5HL7|1|X|G|1384
5HL7|1|X|G|1385
5HL7|1|X|U|1386
5HL7|1|X|C|1387
*
5HL7|1|X|G|1418
5HL7|1|X|A|1419
5HL7|1|X|U|1420
5HL7|1|X|A|1421
5HL7|1|X|A|1422
*
5HL7|1|X|U|1439
5HL7|1|X|A|1440

Current chains

Chain X

23S ribosomal RNA

Nearby chains