J3_5I4L_001

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAAUUUGAAA*UAAUUUGGAG*CGAAG

Length

26 nucleotides

Bulged bases

5I4L|1|1|G|156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5I4L_001 not in the Motif Atlas

Homologous match to J3_8P9A_042

Geometric discrepancy: 0.0719

The information below is about J3_8P9A_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19664.1

Basepair signature

cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5I4L|1|1|C|113
5I4L|1|1|A|114
5I4L|1|1|A|115
5I4L|1|1|A|116
5I4L|1|1|U|117
5I4L|1|1|U|118
5I4L|1|1|U|119
5I4L|1|1|G|120
5I4L|1|1|A|121
5I4L|1|1|A|122
5I4L|1|1|A|123
*
5I4L|1|1|U|149
5I4L|1|1|A|150
5I4L|1|1|A|151
5I4L|1|1|U|152
5I4L|1|1|U|153
5I4L|1|1|U|154
5I4L|1|1|G|155
5I4L|1|1|G|156
5I4L|1|1|A|157
5I4L|1|1|G|158
*
5I4L|1|1|C|263
5I4L|1|1|G|264
5I4L|1|1|A|265
5I4L|1|1|A|266
5I4L|1|1|G|267

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L8

60S ribosomal protein L8-A

Chain M3

60S ribosomal protein L13-A

Chain M5

60S ribosomal protein L15-A

Chain O5

60S ribosomal protein L35-A

Chain O6

60S ribosomal protein L36-A