J3_5I4L_017

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5I4L_017 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.0899

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.1

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

2

Unit IDs

5I4L|1|2|A|760
5I4L|1|2|G|761
5I4L|1|2|A|762
5I4L|1|2|G|763
*
5I4L|1|2|C|773
5I4L|1|2|A|774
5I4L|1|2|G|775
*
5I4L|1|2|U|785
5I4L|1|2|C|786
5I4L|1|2|G|787
5I4L|1|2|A|788
5I4L|1|2|A|789
5I4L|1|2|U|790

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A