3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUA*UUACG*CAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5I4L_019 not in the Motif Atlas
Homologous match to J3_4V88_034
Geometric discrepancy: 0.2213
The information below is about J3_4V88_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_23622.1
Basepair signature
cWW-tWW-tWW-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

5I4L|1|2|C|1037
5I4L|1|2|U|1038
5I4L|1|2|A|1039
*
5I4L|1|2|U|1079
5I4L|1|2|U|1080
5I4L|1|2|A|1081
5I4L|1|2|C|1082
5I4L|1|2|G|1083
*
5I4L|1|2|C|1090
5I4L|1|2|A|1091
5I4L|1|2|A|1092
5I4L|1|2|A|1093
5I4L|1|2|G|1094

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain D1
40S ribosomal protein S21-A
Chain D2
40S ribosomal protein S22-A
Chain D6
40S ribosomal protein S26-B
Chain D7
40S ribosomal protein S27-A
Chain S0
40S ribosomal protein S0-A

Coloring options:


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