3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5I4L_021 not in the Motif Atlas
Homologous match to J3_4V88_036
Geometric discrepancy: 0.1083
The information below is about J3_4V88_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.2
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

5I4L|1|2|U|1168
5I4L|1|2|G|1169
5I4L|1|2|G|1170
5I4L|1|2|A|1171
*
5I4L|1|2|U|1468
5I4L|1|2|A|1469
5I4L|1|2|C|1470
*
5I4L|1|2|G|1574
5I4L|1|2|G|1575
5I4L|1|2|A|1576
5I4L|1|2|A|1577

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C6
40S ribosomal protein S16-A
Chain C8
40S ribosomal protein S18-A
Chain C9
40S ribosomal protein S19-A
Chain S5
40S ribosomal protein S5

Coloring options:


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