3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UCUUAG*CGAGAC*GCAAUA
Length
18 nucleotides
Bulged bases
5I4L|1|2|U|1285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5I4L_024 not in the Motif Atlas
Homologous match to J3_4V88_039
Geometric discrepancy: 0.11
The information below is about J3_4V88_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_47248.1
Basepair signature
cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
Number of instances in this motif group
1

Unit IDs

5I4L|1|2|U|1283
5I4L|1|2|C|1284
5I4L|1|2|U|1285
5I4L|1|2|U|1286
5I4L|1|2|A|1287
5I4L|1|2|G|1288
*
5I4L|1|2|C|1327
5I4L|1|2|G|1328
5I4L|1|2|A|1329
5I4L|1|2|G|1330
5I4L|1|2|A|1331
5I4L|1|2|C|1332
*
5I4L|1|2|G|1419
5I4L|1|2|C|1420
5I4L|1|2|A|1421
5I4L|1|2|A|1422
5I4L|1|2|U|1423
5I4L|1|2|A|1424

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C6
40S ribosomal protein S16-A
Chain C7
40S ribosomal protein S17-A
Chain D0
40S ribosomal protein S20
Chain D9
40S ribosomal protein S29-A
Chain S2
40S ribosomal protein S2
Chain S3
40S ribosomal protein S3

Coloring options:


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