3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUUAAUUU*GGGGAAACUCAC*GGCCG
Length
25 nucleotides
Bulged bases
5I4L|1|6|G|1199, 5I4L|1|6|G|1201, 5I4L|1|6|A|1203
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5I4L_052 not in the Motif Atlas
Homologous match to J3_8P9A_078
Geometric discrepancy: 0.0714
The information below is about J3_8P9A_078
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

5I4L|1|6|C|1180
5I4L|1|6|U|1181
5I4L|1|6|U|1182
5I4L|1|6|A|1183
5I4L|1|6|A|1184
5I4L|1|6|U|1185
5I4L|1|6|U|1186
5I4L|1|6|U|1187
*
5I4L|1|6|G|1198
5I4L|1|6|G|1199
5I4L|1|6|G|1200
5I4L|1|6|G|1201
5I4L|1|6|A|1202
5I4L|1|6|A|1203
5I4L|1|6|A|1204
5I4L|1|6|C|1205
5I4L|1|6|U|1206
5I4L|1|6|C|1207
5I4L|1|6|A|1208
5I4L|1|6|C|1209
*
5I4L|1|6|G|1454
5I4L|1|6|G|1455
5I4L|1|6|C|1456
5I4L|1|6|C|1457
5I4L|1|6|G|1458

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain c5
40S ribosomal protein S15
Chain c8
40S ribosomal protein S18-A
Chain d0
40S ribosomal protein S20
Chain d9
40S ribosomal protein S29-A
Chain e1
Ubiquitin-40S ribosomal protein S31
Chain sM
Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1

Coloring options:


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