J3_5I4L_064

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACGGUGGC*GAAUCCGCUAAGG*CAC

Length

25 nucleotides

Bulged bases

5I4L|1|1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5I4L_064 not in the Motif Atlas

Geometric match to J3_5TBW_089

Geometric discrepancy: 0.0731

The information below is about J3_5TBW_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32853.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-tWW-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5I4L|1|1|G|1230
5I4L|1|1|A|1231
5I4L|1|1|C|1232
5I4L|1|1|G|1233
5I4L|1|1|G|1234
5I4L|1|1|U|1235
5I4L|1|1|G|1236
5I4L|1|1|G|1237
5I4L|1|1|C|1238
*
5I4L|1|1|G|1250
5I4L|1|1|A|1251
5I4L|1|1|A|1252
5I4L|1|1|U|1253
5I4L|1|1|C|1254
5I4L|1|1|C|1255
5I4L|1|1|G|1256
5I4L|1|1|C|1257
5I4L|1|1|U|1258
5I4L|1|1|A|1259
5I4L|1|1|A|1260
5I4L|1|1|G|1261
5I4L|1|1|G|1262
*
5I4L|1|1|C|1277
5I4L|1|1|A|1278
5I4L|1|1|C|1279

Current chains

Chain 1

25S ribosomal RNA

Nearby chains