3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAUAGCGAACAAGUAC*GGAAAG*CUUG
Length
27 nucleotides
Bulged bases
5I4L|1|5|U|343, 5I4L|1|5|A|351, 5I4L|1|8|U|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5I4L_079 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0329
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

5I4L|1|5|C|340
5I4L|1|5|G|341
5I4L|1|5|A|342
5I4L|1|5|U|343
5I4L|1|5|A|344
5I4L|1|5|G|345
5I4L|1|5|C|346
5I4L|1|5|G|347
5I4L|1|5|A|348
5I4L|1|5|A|349
5I4L|1|5|C|350
5I4L|1|5|A|351
5I4L|1|5|A|352
5I4L|1|5|G|353
5I4L|1|5|U|354
5I4L|1|5|A|355
5I4L|1|5|C|356
*
5I4L|1|5|G|363
5I4L|1|5|G|364
5I4L|1|5|A|365
5I4L|1|5|A|366
5I4L|1|5|A|367
5I4L|1|5|G|368
*
5I4L|1|8|C|21
5I4L|1|8|U|22
5I4L|1|8|U|23
5I4L|1|8|G|24

Current chains

Chain 5
25S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain l4
60S ribosomal protein L4-A
Chain n6
60S ribosomal protein L26-A
Chain o7
60S ribosomal protein L37-A
Chain o9
60S ribosomal protein L39

Coloring options:


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