3D structure

PDB id
5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
2.99 Å

Loop

Sequence
UUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5IB7_021 not in the Motif Atlas
Homologous match to J3_7RQB_010
Geometric discrepancy: 0.0527
The information below is about J3_7RQB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89368.3
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

5IB7|1|14|U|2091
5IB7|1|14|U|2092
5IB7|1|14|G|2093
*
5IB7|1|14|C|2196
5IB7|1|14|U|2197
5IB7|1|14|A|2198
5IB7|1|14|A|2199
5IB7|1|14|C|2205
*
5IB7|1|14|G|2219
5IB7|1|14|G|2224
5IB7|1|14|A|2225
5IB7|1|14|C|2226
5IB7|1|14|A|2227
5IB7|1|14|G|2228

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L2
Chain 3E
30S ribosomal protein S4
Chain 69
50S ribosomal protein L9
Chain F5
50S ribosomal protein L28

Coloring options:


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