J3_5IB7_069

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

5IB7|1|1H|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IB7_069 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0685

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5IB7|1|1H|C|297
5IB7|1|1H|G|298
5IB7|1|1H|A|299
5IB7|1|1H|A|300
5IB7|1|1H|G|301
*
5IB7|1|1H|C|316
5IB7|1|1H|G|317
5IB7|1|1H|C|318
5IB7|1|1H|C|319
5IB7|1|1H|A|320
5IB7|1|1H|G|321
5IB7|1|1H|A|322
5IB7|1|1H|G|323
5IB7|1|1H|A|324
5IB7|1|1H|G|325
*
5IB7|1|1H|C|337
5IB7|1|1H|G|338
5IB7|1|1H|U|339
5IB7|1|1H|A|340
5IB7|1|1H|G|341

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain G8

50S ribosomal protein L24