3D structure

PDB id
5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
2.99 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5IB7_070 not in the Motif Atlas
Homologous match to J3_9DFE_013
Geometric discrepancy: 0.0471
The information below is about J3_9DFE_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

5IB7|1|1H|G|1424
5IB7|1|1H|G|1425
5IB7|1|1H|G|1426
5IB7|1|1H|A|1427
5IB7|1|1H|C|1428
5IB7|1|1H|G|1429
*
5IB7|1|1H|C|1564
5IB7|1|1H|C|1565
*
5IB7|1|1H|G|1568
5IB7|1|1H|A|1569
5IB7|1|1H|A|1570
5IB7|1|1H|A|1571
5IB7|1|1H|A|1572
5IB7|1|1H|G|1573
5IB7|1|1H|C|1574

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 11
50S ribosomal protein L2

Coloring options:


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