J3_5IB8_016

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5IB8|1|14|G|686, 5IB8|1|14|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IB8_016 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1141

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5IB8|1|14|C|683
5IB8|1|14|G|684
5IB8|1|14|A|685
5IB8|1|14|G|686
5IB8|1|14|C|687
5IB8|1|14|U|688
5IB8|1|14|A|689
*
5IB8|1|14|U|773
5IB8|1|14|A|774
5IB8|1|14|G|775
*
5IB8|1|14|C|791
5IB8|1|14|G|792
5IB8|1|14|A|793
5IB8|1|14|G|794

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain L5

50S ribosomal protein L34