J3_5IB8_018

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IB8_018 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0619

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5IB8|1|14|C|1298
5IB8|1|14|G|1299
5IB8|1|14|U|1300
5IB8|1|14|A|1301
5IB8|1|14|A|1302
5IB8|1|14|G|1303
*
5IB8|1|14|C|1625
5IB8|1|14|G|1626
5IB8|1|14|G|1627
*
5IB8|1|14|U|1639
5IB8|1|14|C|1640
5IB8|1|14|A|1641
5IB8|1|14|G|1642

Current chains

Chain 14

23S ribosomal RNA

Nearby chains