J3_5IB8_023

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5IB8|1|14|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IB8_023 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0658

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

5IB8|1|14|C|2517
5IB8|1|14|A|2518
5IB8|1|14|U|2519
5IB8|1|14|C|2520
*
5IB8|1|14|G|2545
5IB8|1|14|U|2546
5IB8|1|14|U|2547
*
5IB8|1|14|A|2561
5IB8|1|14|U|2562
5IB8|1|14|U|2563
5IB8|1|14|A|2564
5IB8|1|14|A|2565
5IB8|1|14|A|2566
5IB8|1|14|G|2567

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 25

50S ribosomal protein L14