J3_5IB8_056

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IB8_056 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1342

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

5IB8|1|13|U|1073
5IB8|1|13|G|1074
*
5IB8|1|13|U|1083
5IB8|1|13|G|1084
5IB8|1|13|U|1085
5IB8|1|13|U|1086
*
5IB8|1|13|G|1099
5IB8|1|13|C|1100
5IB8|1|13|A|1101
5IB8|1|13|A|1102

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1E

30S ribosomal protein S2

Chain 4E

30S ribosomal protein S5