J3_5IBB_013

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IBB_013 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0634

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5IBB|1|14|G|30
5IBB|1|14|C|31
*
5IBB|1|14|G|474
5IBB|1|14|U|475
5IBB|1|14|G|476
5IBB|1|14|A|477
5IBB|1|14|A|478
5IBB|1|14|A|479
5IBB|1|14|A|480
5IBB|1|14|G|481
*
5IBB|1|14|C|509
5IBB|1|14|C|510

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24