J3_5IBB_020

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IBB_020 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1331

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5IBB|1|14|G|1344
5IBB|1|14|C|1345
5IBB|1|14|G|1346
5IBB|1|14|G|1347
5IBB|1|14|G|1348
5IBB|1|14|A|1349
5IBB|1|14|C|1350
*
5IBB|1|14|G|1381
5IBB|1|14|G|1382
5IBB|1|14|C|1383
5IBB|1|14|A|1384
5IBB|1|14|G|1385
*
5IBB|1|14|C|1402
5IBB|1|14|C|1403

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23